Recent Changes

Thursday, February 4

  1. page NexSON edited This file has moved As of January 2014, the latest version of this file is now kept at the foll…

    This file has moved
    As of January 2014, the latest version of this file is now kept at the following location:
    https://github.com/OpenTreeOfLife/phylesystem-api/wiki/NexSON
    The text below (probably obsolete) is retained as a backup copy.

    Overview
    NexSON is a translation of NeXML to JSON using the BadgerFish conventions. Each NexSON file represents a Phylografter study, though it may contain exactly one or all the trees included in the study. The set of elements used in these files is (currently) limited to nexml, otus, otu, trees, tree, node, and edge - note that there is no current support for data matrices. There is also an associated metadata vocabulary currently used for annotating elements of type nexml, otu, tree, and node.
    (view changes)
    2:48 pm

Friday, October 16

  1. page home edited ... Products blog: http://blog.opentreeoflife.org ... / management: http://curator.opentreeof…
    ...
    Products
    blog: http://blog.opentreeoflife.org
    ...
    / management: http://curator.opentreeoflife.orghttps://tree.opentreeoflife.org/curator
    the latest version of the Open Tree of Life: http://tree.opentreeoflife.org/
    the Open Tree Taxonomy: http://files.opentreeoflife.org/ott/
    (view changes)
    4:25 am

Friday, July 3

  1. page Grant Proposal edited ... Biological research of all kinds, including studies of ecological health, environmental change…
    ...
    Biological research of all kinds, including studies of ecological health, environmental change, and human disease, increasingly depends on knowing how species are related to each other. Yet there is no single resource that unites knowledge of the tree of life. Instead, only small parts of the tree are individually available, generally as printed figures in journal articles. This project will provide the global community of scientists who study the tree of life with a means to share and combine their results, and will enable large-scale studies of Earth’s biodiversity. It will also create a resource where students, educators and citizens can go to explore and learn about life’s evolutionary history.
    Original grant
    ...
    summary {Project_summary.pdf} or, the full Project description {Project_Description.pdf} or the Supplemental Grant Proposal {OpenTree_supplement.pdf} .
    (view changes)
    12:38 pm
  2. 12:38 pm
  3. page home edited ... the Open Tree Taxonomy: http://files.opentreeoflife.org/ott/ source code on GitHub: https://g…
    ...
    the Open Tree Taxonomy: http://files.opentreeoflife.org/ott/
    source code on GitHub: https://github.com/OpenTreeOfLife
    What are we working on right now?
    We are collecting published trees for inclusion in the Open Tree of Life.
    Implementing a Public tree site for educational outreach.
    Synthesizing an initial tree from taxonomic and phylogenetic data
    Developing a tree ingest / curation workflow
    education & outreach site: http://etreeoflife.com/
    Project documentation
    Our Software development page has details for geeks
    (view changes)
    12:36 pm
  4. page home edited ... Promote a culture of data sharing among systematists through software products that target key…
    ...
    Promote a culture of data sharing among systematists through software products that target key bottlenecks in phylogenetic workflows
    Develop, disseminate, and evaluate novel methods for phylogenetic synthesis
    Products
    blog: http://blog.opentreeoflife.org
    source tree upload / management: http://phylografter.opentreeoflife.org (soon to be replaced with a new curation interface)
    beta version of web application: http://dev.opentreeoflife.org/opentree
    data: input trees and draft synthesis tree
    source code on github

    How to get involved
    signimprove the synthetic tree by uploading published phylogenies
    leave feedback on the current version of the synthetic tree
    sign
    up for the general mailing list or the software mailing list
    join this wiki
    add phylogeny publications to thesuggest phylogenies that we should include: OpenTree Mendeley
    follow us on Twitter
    comment and voteProducts
    blog: http://blog.opentreeoflife.org
    source tree upload / management: http://curator.opentreeoflife.org
    the latest version of the Open Tree of Life: http://tree.opentreeoflife.org/
    the Open Tree Taxonomy: http://files.opentreeoflife.org/ott/
    source code
    on issues on our Trello development boardGitHub: https://github.com/OpenTreeOfLife
    What are we working on right now?
    We are collecting published trees for inclusion in the Open Tree of Life.
    ...
    Project documentation
    Our Software development page has details for geeks
    We are using Trello development board to document upcoming, current and past tasks
    Notes from meetings and design docs are in this public Open Tree of Life folder on Google Docs
    All of the code is on GitHub
    We have a set of six-month summaries that details progress up to January 2013
    Funding
    ...
    (grant #DEB-12008809). We've postedYou can see copies of the original grant proposal as well as the Supplemental Grant Proposal on the Grant Proposal.Proposal page.
    (view changes)
    12:33 pm

Thursday, July 2

Friday, January 16

Friday, July 11

Monday, June 30

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